NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1000694

Scaffold Ga0209831_1000694


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1000694 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32373
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (69.09%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019271Metagenome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_100069430F019271GAGVRWFDNGSKDDTWEPVENLLRNLVVRFLRQKKKHVPGYEWHTPMRRSRRQAGFTTVANIVTDSTWIPTLQHVHVTGDGVIHADVSWTDSSTAAATKEVIPVAWLKSTLPSMTRNFAYDPRLASRLFPRLNRVYGPYTYVWPKSAQATLVGSDPSVPVLRNGFLVPPVQHLDSVLRRLLTTTEEATVVIPQWTNTIWYATAIRACFDYEVLLSADARDTNPTTWAMMACHLLHRYEDKQKN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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