NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209831_1001127

Scaffold Ga0209831_1001127


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1001127 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25181
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (78.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013163Metagenome273Y
F027092Metagenome195N

Sequences

Protein IDFamilyRBSSequence
Ga0209831_100112715F027092GGAGGVETPSPSPFDKTNCALDYDSPMGFAVILSSRWGKAGLWVDFGGSSFDGPS
Ga0209831_10011279F013163AGGMSLASRGPAGGSSRKGQTLTGSRGLSINQLHSSWDEDDTATYDTVAVLPSGTPGFRTAGGAPYAPCETPTGPLLCYMCWTRGHRVPDCKFLTDKQRDLMEAARSIFLRQRNKAAAAVADRTSVVALVLDDLLGCADSTETEGGGGPPVATPAKGRRGAGNA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.