NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1002357

Scaffold Ga0209831_1002357


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1002357 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16494
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061493Metagenome131Y
F066406Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_100235716F066406GAGGVSVASRPSTRASKLTVTQLVFVARGAFPRSTPCVCALRDFLPGRVLPDRTTRRHGLARPPPNWVGWAERVVTFGGAAEEEGNSTFLGVVAVRQPASGGT
Ga0209831_100235719F061493GGAMPVRILSRPKGIRPRDAPLPKGVCGQNVVAILTGSNYQVASRVWLDARRELAHRIIVDTGSCVSLVREALLPPEMEVVPLDAATAQLFDVNGGFLPITGTVTLTVRVGTYSTPVTCGVVRGMSVPLL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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