NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1002915

Scaffold Ga0209831_1002915


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1002915 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14524
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055389Metagenome138Y
F061490Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209831_100291510F061490AGGAVIRPANIRFKTLLDYRTNFLIRRQLTFTPREAQRSHRLKKLLGGAFHGQQPFTGALPSGIFMFLTTLRPACVAAGLTHGQALPLMVFRIAGNAKMAFFGALNSTLGRKRYAIRTYGDAFNWLFLKNATHATMANAHQDIITLKQQDNEAPTAFGTRVESQCNVLNGLINIQDVKDVFITGLSDLVQAHVRVLNGRFPD
Ga0209831_100291512F055389AGGVPDLGLPGGTRKRTITRLLRRALRHYEIAATLGPCMCVRWSYRPALDTSAGVNIVRTSVLPANWMACAEELTTLPRIQDANNNLLVTKYAIYLYVDTGGVRLFDQFLVFDNLSVPCILGTEFIDHNIEAILPLLRKIVWQEHMRCTEELPRPTPILDCVNDSASDRHWQGKPARVRACKQVHADGQQEEWMMATCDTPGMVTITPNARLCRHKSMAVARGLAIVKPDESFLVKLFNFGKDQVIFRKNSMWGLRNLSKGLCWPPS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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