NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1003103

Scaffold Ga0209831_1003103


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1003103 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13962
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048070Metagenome148Y
F098555Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209831_100310315F098555GGAMVRAIFHNKMDAGRIENHQDAPMHDCLTWICPKGHLEGPKKDSARCLRTAMERAVDKAVSKVDFTVAGRIGKKKEYKMALNRKLRNVCNRRRNATRLMIYRKIGVYLDAGVPQATIQPLQVLRDNEDQLAPASAAVSDRVTRYQLVLDDSDARATCFLDLEATAASIIAEFLCVDPGDITAGTRAAGAHHIKSYIEKNEMPKLFRPDSADVRNSVVQCICDELKDIAASQFNLSADEEAD
Ga0209831_10031034F048070GAGMNHGVGFVSLASVDKSTSYSKHARMAVAYQLVFVHCGMTTVASSVEVARRRRIESKCYTGGTRNPFGSAGTEGSDSISVACANFGHTQVYGP
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