NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209831_1003153

Scaffold Ga0209831_1003153


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1003153 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13790
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038959Metagenome164Y
F046156Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_10031531F046156N/AVRPSNPFAKQTAAKPHALVPSLDDRASSITVVRRSCAARYRRFYVGFMDDAPGDSPLVPTFTYIYTSPPFIGASDKEDTTMVQSTTARNHHRGGLTGHLVARHRAEYLSCATATSSRLNLSTFAWCYGVEVPYGSMAELPWVPADTTDDLHAGRHTPWAILRIEWPCPEAPLNKGRMKHHGREGTDPRGCSRLESRRCRCVDGASRHVHDQYTPRRSFAYASRQRHLYPESNPDPTLRSA
Ga0209831_10031532F038959N/AMRSWTGNTPAAPPRRGSKPKAQAGTSRLTLAYNSRPQQSTGVAPLEFVTPERVRSLSVERLVGSSAPEKTDSSPRAVRKGIPARLRNLIHKVRKSLMLALRRYKRNNDARVRPVNEDVHAGDWVFVDGHARTKYKLGTRAAGPYEVLFRGEGTFSLDIEGYPETVSSDHLTAAPGPPGDPQTLLQNLGVPQDIVVPEGHQHMGKEFVWEAFVNHEVADDGTLRQWTHWCGCNPEEDTLELASRFDRRKVHQYIRRVGLRVEEAGTVVDFLA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.