NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1003884

Scaffold Ga0209831_1003884


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1003884 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12088
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F048070Metagenome148Y
F104363Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_100388410F013269AGGAGMVTADKFFLPISVNDKRGGIRVCVDDHEASDGFALQLFLPIVVGRGYVVADIDVRIAGCDPMVEVTFVTLLRLTQGLDYDGDLLAQVGHKHAFVC
Ga0209831_100388411F104363GAGMDISVTGIIDMLDSGYPRGVHDYVGYGCEPGLSATSPCWRLPLVPLYMLLFLSKEAHNQVAWEVLQGLPGVEFRPVVESAHLSAIADASLA
Ga0209831_10038848F048070AGGMAHVVGFVSLASAHQSTSYLKQARMAVAYQLVLVHCGMTTVASSVVVTKRRRTESKCCTGGTRNPLGSTGAGGSLPISVACADFGHTYGYGP
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