NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1004165

Scaffold Ga0209831_1004165


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1004165 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11513
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013163Metagenome273Y
F026183Metagenome198Y
F036534Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_10041651F026183AGGAVRPVNKDVQAGDWMFVDGHARTTYKLGTRAAGPYKVLARGEGTFSLDIGGYPETVSSDHVTAAQGPPGDPPTLLQNLGVPQDVDVPKGHQHTGKELVWRAFVGHKVADEGKLRLWTRWWGYHPEEDTLELASRFDLRNVHQYMRRVGLRVEETGSVVDFLA
Ga0209831_100416514F036534GGAGGMGGIKIDTLTETNFREWRQRIKMVLALRDLDDMLDEDGKSTVAETRELAVWKRRDTKASAIIGLTLGSEQLEHVSGCKTTAEM
Ga0209831_10041655F013163GGAGLGLAQDKFSRATLVDNEGLHAFATRLRSLAELCGNIHSEGTMKQQLIQGLPEYFRTDVFVYNTVQRSYQQLSDYVAEKYRAAEDFMALANRGSPEGSSRKGQTLTGPRGLSVNHLGSSWEEDDTETHDMVAVLPSGTPGFRTGRAAPQPRREVTTGPPLCYRCWTRRNRVPDCKILTDKQRQIVKAARSTFLRKRNAGVVTTPDRTTVVALMWNAMFGGAEPAKTEGGGVPPVATPSKGRRGAENA
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