NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1004839

Scaffold Ga0209831_1004839


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1004839 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10380
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F023776Metagenome208Y
F036067Metagenome170Y
F073006Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_10048393F073006GGAMLQSINVLFMHVQLPWADNVSEVLDFVGEPCALFQVQGNPGFAETVQNRVNVLDVLFRVREEDDDIV
Ga0209831_10048394F023776N/AVIRSDEEPLPVEELPQPEDSPHDAEAFALRAGVVFLCSSESSAPISDRMKQFARFLLEEGTPDLVGTCFNIDDELPIGLWQGKYRWAQ
Ga0209831_10048395F036067GAGGMRRRLRLSEYTFDMVYKPGTSHHLPNFLSRASTVAPTEDIHEDIPCLALADTANGLRTGWYRGTDTPEPVEFDDVIEAQQAHNYYVEMSTRMERGTAKAFFRTQHHALYRRTP
Ga0209831_10048397F013269AGGAGMVTADAFFLPVNLNDELGGIRIRVNDHEVFNGLALQLGLRIVDGRTYVVTDLDVRIAGCDPVVEVTFVKLLRLTKRLDYERDLPAKAGHELAFSS
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