NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1004897

Scaffold Ga0209831_1004897


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1004897 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10305
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F036067Metagenome170Y
F104363Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_100489711F036067GGAMRWRLRLSEYTCDVVCNSGASHNLPDFLSHASTVAPPEDIHDDIPCLALAEKANGLRKGRYMGSDKPAPVEFDDVVEAQQTDDYCVEMSTRVERGTAKAFFRNEHHALYRRTPYGNQLVIPKLLR
Ga0209831_100489714F013269AGGAGMVTADTFFLFVSVNDKRGGIRVCVDDHEGSNGFALQLIFPIVVGRVYVDADIDVRIAGCDPMVEDTFVTLLRLTRGLDCDGDLLAQVGHKHAFSC
Ga0209831_100489715F104363GAGMDISVTGIIDMLDSGYPRGVHDDVGHGCEPGLSATLPCWRLPLVPLYMLLFLSKEAHNQVAWEVLQGLPGVEFRPVVESAHLSAIAVASLA
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