NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1005474

Scaffold Ga0209831_1005474


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1005474 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9533
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006930Metagenome361Y
F013269Metagenome272Y
F024709Metagenome204Y
F048070Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_100547417F006930GGAVTLMVPHMVHLQDVVKLHTFVLGDLGALLLACFGFDLRFALVAFDLVSDSIWCEGVGVGVGARGGSTWAG
Ga0209831_10054743F013269AGGAGMITDDMVILDVNVNDKRGGIRVCVDDHEGPNGFALQLVLPNVVGRVYVVADHDVRIAGYYLMVALTFVTLLRLTQGLDYDGDLLAQAGLELAFAS
Ga0209831_10054744F048070AGGMAQGVRFESFASVDKSTSYSKHARMAEAYQLVLVHCGMTTVASSVVVTRRRKTESKCCAGRTRNPLGSVGTEGSLPTSVACADFGHAYVYGP
Ga0209831_10054745F024709N/AVRDVRIRAPRGAARSAVAHAWVDQVTGLRRAVKRADSEGVESALAIIGQAVVCAVDGDANYKRFAQNLESIQPEQVAAPTRFNAQSVLRRSAYDNGGPSGGAPPSARNARARSVSQ
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