NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1007378

Scaffold Ga0209831_1007378


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1007378 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7760
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028401Metagenome191Y
F061490Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209831_10073784F061490AGGAVIRPANSRFKALLDYRTYFLIRRQLTYTPEEAQRSHRLNKRLDGAFHGQQPFTGALPLGIFTLLTTIRRACDAAGLTHGQALPLMVFRLAGNAKMAFSGALNSTLGRQRYAIRTYGDAVNWLLSKYAIHATMANAYQDIITMKQQDNEAPTAFGHRVETQCDLLNGLFDIQDVMDIFITGLSDLVQAHVRVLNDQFPDRTLSETVATAQMYWDGTNKLR
Ga0209831_10073788F028401AGGMRYSFSVLPANWMAYAEKLTTLPRILDANNNRLVTKYDIHLYVDTGGVRLFDRFLISDNLSVSCILGTEFIEQNIEGIFPRLRKIVWQEHVRCTEELPRPTPILACLNDSAWDRHWQDRPARVRA
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