NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1020290

Scaffold Ga0209831_1020290


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1020290 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3579
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038959Metagenome164Y
F046156Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_10202901F046156N/AVLSDPSTSAPAWKREEARMDVADTLAHATFRGIDSVRPANPFAKQTAAKPHALVPSLDDRASSITVVRRSCEAGYRHSYVGFMNEAPRDSPLMPTFVYLLTSPPFIGASDKEDPTTVQSTTARNHHRGGLTGHLVARHRAKYLSCATATRSRLNLSTPAWCYGVEVPYGSMAELPWVPVDTTDDLYVGRHTPWAILCIEWAR
Ga0209831_10202902F038959GGAGVERLVTSPEPEETDGSPRAVREGIRARLRNLILKVRKSFTLAQRRYKRNYDARVRPVNKDVHAGDWVFVDGHTRTTYKLGTRAAGPYNMLSRGEGTFSLDIDGYPDTVSSDHMTAAPGMPGDPQTLLQNLGVPQDIVVPEGHQHTGKELVWETFVDDEVADDDTLRLWTRWWGYDPKEDTLLLASRFDLRNLHQYMRRVGLRVEEAGSVVDFLA
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