NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1022399

Scaffold Ga0209831_1022399


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1022399 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3292
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023776Metagenome208Y
F036067Metagenome170Y
F073006Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_10223994F036067GGAMRWRLRLPEYTFDMVYKPGASRHLPDFLSRVSAVAPPDDIHDDIPCLALAETANGLMRGRCTGTDSPSLVEFEDVVEAQQTDEYCVAMTKRVEIGTAKAFFRDERHALYRRAPYGNQLVIPKS
Ga0209831_10223995F023776N/AVIRSDEELLSVEEVPQLEDSPHDAKAFSLRGGVVLVCSSDSSAPISDRKKHFARFLLEEGTTDLIGTCVNVDDDFPVGLWQGQHRCAQHCVSKVFERGDGRVRRWW
Ga0209831_10223996F073006GGAMLQSIQVLLMHVQLPGATNVSEVLDLIGEPRALFQVEGNPGFAETVKNRVNVFDVLFRVRGEDDDVV
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