NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1058763

Scaffold Ga0209831_1058763


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1058763 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1419
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027729Metagenome193Y
F046156Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_10587631F027729N/ADPQTLLQNLGVPQDIVVPEGHQHTGKEFVWEAFVGHEVADDGTLRLWTRWWGYHPEEDTLELASRFDKRKVHQYMRRVGLRVEEAGSVVDLLA
Ga0209831_10587632F046156N/AVRVCVVLRDGRQEEEMASSTAVGPLPVLSDPSTWAPAWEREEARMGGADTLARATFRGIDSVRPANPFAKHNAARSHALVPSLNDRASSITVVRRSREVGYRRSHVGFMDDAPGDSPWEPTFAYILTSPPFIGASDKEDTTTVQSTTARNHHRGGFTGHLVARHRAEHLSCATATRSRVNLSTPAWCYGVEVPYGSMADLPWVPADTTDDLHAGRHTPWAILRIEWARLEAPLNKGRMKHDGREGTTPRGCSSSECRRCRCVDGAGRRVSDQ
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