NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209831_1083828

Scaffold Ga0209831_1083828


Overview

Basic Information
Taxon OID3300027554 Open in IMG/M
Scaffold IDGa0209831_1083828 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1031
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F031346Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209831_10838281F013269AGGAGMVTADAFLLAVNVNDKRGGVRVRVDDHEGANGVALQLVLPIVVGRAYVVADLDVRIAGCDSMVEVTFVTLLRLTQGLD
Ga0209831_10838282F031346N/AMDFTWIPTIQHVHVTGDGVIHADVSWTESSTDVAIMEVIPVAWLKSTLPPMTRNFAYDPQLALRHFSRLNRVYGPYTYVWPKSEQATLIGSDPPVPVLPNGFLVPPVQHLDSVLRRLVTTTEEATVVIPQWTNTSWYATAIRACFEYEVLLSAD

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