NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209743_1000523

Scaffold Ga0209743_1000523


Overview

Basic Information
Taxon OID3300027556 Open in IMG/M
Scaffold IDGa0209743_1000523 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11425
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049277Metagenome147Y
F094501Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209743_10005232F049277AGGAGMGNFKTYFGKSPLDYVFDQESVFSRTQKATEKVRDYVAQMQKLAKRVPGLDDDLIIWAIIKGLRPFIKASVIQHKAKVTTLADLLQHAKLAESAGAGTADDHLEDAKIRQLRDEIRAGREEVQQLNARMTRMTLSAVQQRSPTPTRRPQHVSFRQDGGWEEQRVDGPNRGAASFTRGNGRGQYRPYSNNRITQSSSYEPGTMPRECNRCGRNHTDSRPCPAVRLSCFNCGRVGHLRARCFMGRRASMNP
Ga0209743_10005236F094501GGCGGVEASRDYDYISRLNYGVWFTPVRTVKMVTDIWMQVFDVPLPDVPVMQDDIRHAADYTPNCTGNMPARRRVRCREDRAVYIAVHDLYTNMTREVIKTLEHLHDLLPGEKSITTAGISKRALAPFVGWIMRGLFGTATEDELLPIETQIRCIAQGVVMMAEGLEVQNNRLVGFMSMAVDDISNIINMTVYQEEEIRQLRELFVEQLSKLPILQALTTVLARKVEEYVTLTRDLQDFQVGVELLLHGFLTPAVVNKESLRQTLQLI
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