Scaffold Ga0209679_1025634

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209679_1025634

Scaffold Ga0209679_1025634

Overview

Basic Information
Taxon OID	3300027557 Open in IMG/M
Scaffold ID	Ga0209679_1025634 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 2 HERON ISLAND (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4206
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Cyclostomata → Myxini → Myxiniformes → Myxinidae → Eptatretinae → Eptatretus → Eptatretus burgeri	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Max Planck institute for Marine Microbiology, Germany
Coordinates	Lat. (^o)	51.321602	Long. (^o)	12.394572	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001428	Metagenome	697	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209679_10256342	F001428	N/A	LDALYRPVAGKPFVLEDLCFGMGTFVASALTAETIFEIIKCISDVNMPACRHMGSKSEIFRFFNSGYAHDRNISIFRRRASRVTGNTLIKPNYGSMRQSRDSLHHDRDNMTKKSCGGAVL

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