Basic Information | |
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Taxon OID | 3300027559 Open in IMG/M |
Scaffold ID | Ga0209222_1000024 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 55626 |
Total Scaffold Genes | 56 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (83.93%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Thunder Bay, Ontario, Canada | |||||||
Coordinates | Lat. (o) | 49.08 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006944 | Metagenome / Metatranscriptome | 361 | Y |
F033516 | Metagenome / Metatranscriptome | 177 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209222_10000241 | F006944 | GAGG | MRKKKAAEKPVRDLPRPGKQYPGVHGKIVDWAEHVFEQGMMYVRVRFTDKTELCWTLQTAHVLRESDLSDWKTGDCKQLKVYAENEIDWPD |
Ga0209222_100002414 | F033516 | N/A | VNPDEDEDTAVHALENENAGCTHFFSAYGLSPNQYKWLAQNRKKAFPSVCPAPNPSMVDFVVIFTHDVAFYNVTMPTAVHVDGNGFSDWTPMSTVDNSLMTQSEANSSHHEYVWVFHTTRGAFDPAKFSARRKPLFSKGETNMLGSHGGYKTVMDALTYIEEAPTAR |
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