NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209222_1037513

Scaffold Ga0209222_1037513


Overview

Basic Information
Taxon OID3300027559 Open in IMG/M
Scaffold IDGa0209222_1037513 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)934
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001177Metagenome / Metatranscriptome756Y
F056132Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209222_10375131F056132N/ARICPEGLNLRSSGLRCTAEGFTSMKKLLSLGLIMCGSAASAQNAPAPATPTQEQGEARQFGILVGGTATQYDLCVKKGFIAKSDQSAEETAKSIFEKMRASGPDQSAYVQEGWDMIKKEISAHESFYTQEKCAGVGKEWAKIMATMRKK
Ga0209222_10375132F001177AGGAGGMAIKRPTKSKGTLSHKPVATAPLRHVDVRAPQQLTPGEVYVGWLCKNRTCGRVIALAATAPGGKASADFDDQLTAIKCPHCEDENLYRWSARGEQIYTPKSVAT
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