NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209735_1000988

Scaffold Ga0209735_1000988


Overview

Basic Information
Taxon OID3300027562 Open in IMG/M
Scaffold IDGa0209735_1000988 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4935
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027299Metagenome195Y
F074076Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209735_10009887F027299AGGLIKGLLKSLIILIAFVPVATCLPLAALSLCRTPDGAEFLFWAGPWSCCFWVLIYSQLSNVPWRQGADAVRQRRQEQGGLLVASAKATCWMFGALFFSYVAEGAFLFLTRSFAWLPAATFSPLAFAWCWRRVRRAR
Ga0209735_10009889F074076GAGMEEQRKRGRSGNPAERLAAALLIPAELSRRLRLLGNSEIAQLLDDEVCKNMSILAPEATVCVEAALRLRRATGRTQLYSIDRRN
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