NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209552_1012301

Scaffold Ga0209552_1012301


Overview

Basic Information
Taxon OID3300027563 Open in IMG/M
Scaffold IDGa0209552_1012301 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2630
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002149Metagenome / Metatranscriptome589Y
F012953Metagenome / Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0209552_10123011F002149N/AMTAIEYIEESGVPEAMWPNLAEWFGWFENQGMVGIVRDEEGIAGVALARCVKDGQKADHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLWERFGPRKRI
Ga0209552_10123013F012953N/AENPLSVAYNDAEIQAMDLATIVSQDANLLDEDTTGTPAFYYFKGRNTGGTAELDLYPKLDTTSTNTLLVVQKLQCLTRTNLVVDFPPSANAIADELRLPHVSHVVLALTHADALERERQYGKAQVVTQAANADLAAMANYELSQVGGMKQITPVGLGDLGIEEII
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