NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209552_1015488

Scaffold Ga0209552_1015488


Overview

Basic Information
Taxon OID3300027563 Open in IMG/M
Scaffold IDGa0209552_1015488 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2314
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034508Metagenome174Y
F089933Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209552_10154882F089933N/AMVLVPNYDFKCNTCGNTREQFIHHKDYERYVVRCPTLDCNKPMERVYTVPGIKFNGPGFYSTGG
Ga0209552_10154885F034508GGAVVDKNHLNWERIEKWDYIVVAVASEYHRKYGMVELEDIKQSLYKWFLEHPNKLNEWESIGEKDAKNLIYRSLRNDAFDYCLEWKAKSTGYETSDIFFYEADIIEALLPSVLRGEFGVSHKLNLIGPTKPPAPAEGGNMMVMMIEIDKAYRKLNTEDRTVLFYRYAESMDYGDIATEMDLGSEDAARMRHNRAVKKLITRIGGFRPWSDKDIDSKSEDTKDENETVPPNESSEDGSIEGE
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