NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209428_1005730

Scaffold Ga0209428_1005730


Overview

Basic Information
Taxon OID3300027564 Open in IMG/M
Scaffold IDGa0209428_1005730 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4261
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015037Metagenome258Y
F092830Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209428_10057302F015037N/AMHEYYAHENGKIYYTITSRDARENDATQTSEVSKYQIISQLKLDKFQLQC
Ga0209428_10057303F092830N/AMLGLQQMFEVTAARFHAVTQMFAPLIDSVVDDTLLQTRPLGNQTSLQIVPIKNKIKKR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.