NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209428_1009203

Scaffold Ga0209428_1009203


Overview

Basic Information
Taxon OID3300027564 Open in IMG/M
Scaffold IDGa0209428_1009203 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3720
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001910Metagenome619Y
F006534Metagenome371Y

Sequences

Protein IDFamilyRBSSequence
Ga0209428_10092031F006534N/AMCHLYPYQNVKLLWKFFTSIFAVLLVEANFYETRVLDSSYLQYKVQLPTSDSTEITAAGIKVRLEGPVPLEAP
Ga0209428_10092033F001910N/AMAKNDFQYGRWNSYTLQCGTITTLISSGDCTLQCGMWLWNGDSEFTKWQHPAL

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