NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209428_1102904

Scaffold Ga0209428_1102904


Overview

Basic Information
Taxon OID3300027564 Open in IMG/M
Scaffold IDGa0209428_1102904 Open in IMG/M
Source Dataset NameOlavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1497
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Bivalvia → Autobranchia → Pteriomorphia → Mytiloida → Mytiloidea → Mytilidae → Mytilinae → Mytilus → Mytilus galloprovincialis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameZanca-sant'andrea, Tuscany, Italy
CoordinatesLat. (o)42.8072Long. (o)10.1411Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021878Metagenome217Y
F042609Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209428_11029043F042609GGAGLHWKVGGHDFTYFSTLVSDVLVKFCHDVFAAVYGGRGTILVELCDAMTAEPGHIMFVDNFGMSRVVVVVSGSEERLEVCYEKESDGVLLFLVGEFQLAIVGIGILDLLRWVLDTERDVVFESDRSGERVKTAVTHVSYTIVFGSVCH
Ga0209428_11029044F021878N/AMFCGVFEQQKIYVMLSAFFGAEIFYCEAFCVGFERQDADADGGILFFKEGYLFGLNRVIYSGHVECGLVIGII
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