NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208042_1091029

Scaffold Ga0208042_1091029


Overview

Basic Information
Taxon OID3300027568 Open in IMG/M
Scaffold IDGa0208042_1091029 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)772
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002337Metagenome / Metatranscriptome569Y
F095880Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208042_10910291F095880N/AGGLPHNRYLLDFLNMATYHVCVLIWFYYLLVPQKVATTSAVPLPENNLDIWNRELERLLQ
Ga0208042_10910292F002337GGAGMNLAIIIVIAAVLALATILSVAVTQSLHARRSTNLAVAIRPIDIEAFRNLIDPAEDDYLRRRLQPSQFRMVRRERLRAMAAYVEIAGRNASVLVRIGEAALAGGDVRVAGAAQQLVNDALLLRRNATVALARIYLALAWPNSGFAAVRVVDRYEQLSGAAMLLGRLQNPAVPVRLSAMR
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Institute for Fundamental Biomedical Research
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