NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208043_1000785

Scaffold Ga0208043_1000785


Overview

Basic Information
Taxon OID3300027570 Open in IMG/M
Scaffold IDGa0208043_1000785 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13005
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000175Metagenome / Metatranscriptome1756Y
F005732Metagenome / Metatranscriptome391Y
F038361Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0208043_10007854F038361GGAGVTEPAKNERAKSEAVEQKSIMLTVQVLWACHAWNTTPKEAAKQVVADLFDHLSRGGSVSVHVEASDGMEHTLEVTAMR
Ga0208043_10007857F000175N/AVDEGRKRVLLIAASILAARKLAQYDSGARVPATVSAVADAVRWAERIMEEIDQRHPVKPAQQ
Ga0208043_10007858F005732N/AMGKFSPTKQHGDCEEIANTSTAYGRRQRNWIDAHGAVPAGQVVDGSCGNKHCITLKHAYLRPRVEQPGKYRKIADRVHRLRVGQHFDVRGVGTDERSRNRFRSGLYAAARLDRVSVRGLPDGSVRVTKVGEWSSVRA
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