NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208454_1023698

Scaffold Ga0208454_1023698


Overview

Basic Information
Taxon OID3300027573 Open in IMG/M
Scaffold IDGa0208454_1023698 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1452
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8898Long. (o)-106.9077Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063430Metagenome129N
F068627Metagenome124Y
F068642Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0208454_10236982F068627AGGAGMRVDERREPRLQLESSPPTVGTVEPLLTATEVGRLLAIPTKRVYDVVGQLAIQLAPHTLRWRSSDIAALIEARRRSK
Ga0208454_10236983F063430GGAMGRARPDLITVLEENPPGPNAGITLVRRVRSREYRTEIGPRGHLSQIEAAAFLGKSVMAVNRYVRLGLLKDTTRYGISTIQLAELRRFRREYLEGGKGGRLVRGVGGARRKA
Ga0208454_10236984F068642GAGGMRVRPVQRMPEALRRHNEEQQRDPEDVVSSLGRRVRVVVLWRQRDDDPERWIYLERIEPHEFSLETVKIRWGGGAYRVRLLGTWDRARRQEKYITQVAFWIYRGFPPTPALRTRLRDLARRP
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