NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209525_1000006

Scaffold Ga0209525_1000006


Overview

Basic Information
Taxon OID3300027575 Open in IMG/M
Scaffold IDGa0209525_1000006 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102287
Total Scaffold Genes118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)97 (82.20%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005540Metagenome / Metatranscriptome397Y
F041899Metagenome / Metatranscriptome159Y
F043130Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0209525_100000640F041899N/AMLISILILVVSLAALIQFAAFTWRAAFLTVATADLPEDRDKYITLNDFEEASAYERLCPELGVRVSTKLGSVSAYNSLLQFAISVGDSILPPAAGWAQREMALCTRYATVTLARRLERNQIVAAELSSF
Ga0209525_100000674F005540AGGAGVDFVTKFEKALRTRYHHLKTEIAKIEHLIDAFEKGAKRGAKGTSRGKLTAAGRKRISMAQKARWAKRKKGT
Ga0209525_100000685F043130N/AMLHRPRLMPLLFGVILCITSASCRQKANLHDRIIAAETSKYCCLPDACFNPHVLAVETGYDVTTFLGSKPQHAHVAAKDLAKYLQALPMRVWPRGPSIAISPTDDVIDQRAVTQNLDAAQQVCRPMGLQVQVLPGG
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