NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208971_1023736

Scaffold Ga0208971_1023736


Overview

Basic Information
Taxon OID3300027582 Open in IMG/M
Scaffold IDGa0208971_1023736 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2001
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068848Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0208971_10237361F068848N/AIFAEGNFDLPIRTKQMFRNMFMEFFLKDSKYFNIPRSTVGLLDFNNILLNGERLGDRITMDNNFKKDLVDIDGKLKKYYSIDLEDYPQGSFKLESFDNDLKSYIDLLDEDSMMYTVNIDNAKKITLNGNEFNRNTIVDFLDSVDIGSPDTDPDSIFESISNAVWENSVEGDGTSLELFWDKLMSNGMNYQNYFMENVGMLSVVNLNSYDGMFNDNMHNYNTESQSEVLSIFVGWLETNKGKYKL
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