NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209527_1000004

Scaffold Ga0209527_1000004


Overview

Basic Information
Taxon OID3300027583 Open in IMG/M
Scaffold IDGa0209527_1000004 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43005
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005426Metagenome / Metatranscriptome401Y
F015193Metagenome / Metatranscriptome256Y
F035927Metagenome / Metatranscriptome171Y
F043663Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209527_100000411F035927GAGMVTIKVKDGTPQDAETLCITCRWAHIVKGFRVSEKEIFCRYLTDDRPVRFPVSQCNSSDDRRTPSKRDMEQIAWILLTKKAGRTIGFVTAKQFREIEGDDAEIIPAAAIDTTDTEE
Ga0209527_100000428F005426AGGMTEERKFAILFAATILSARKLLDMDPDKPSVAKGFFVDRAIEDAAFILERIDARWPTIVNSFTANTA
Ga0209527_100000429F015193AGGAGMPSYDSFMCPNCEGHFRVIWPQPLPNYTDPCSNVKMKCPDCGEVTELYAYLIDRVLQAPEPGMLSVEVLAISPRDPNPDPYARSYYWQKVWLCQEARYRTTYRPVK
Ga0209527_100000433F043663GGGGGMRVLFDILKKDRKGTFQWLEAASDIETAKARVLQLSSESPDEFIVFREVDLQVVATSRQFREQRLSFAD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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