NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209527_1020207

Scaffold Ga0209527_1020207


Overview

Basic Information
Taxon OID3300027583 Open in IMG/M
Scaffold IDGa0209527_1020207 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1469
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024594Metagenome / Metatranscriptome205Y
F062067Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209527_10202071F024594AGGAGMSATKLVVAMALLLSATSATLAQGPQCYGDRPYYDFYGAGWLDSELHLGIDCNIAPPARVHSGGRGW
Ga0209527_10202072F062067AGGAGMKKFLTTFAVLAAFATPAFAQYAPQDYQPAAPSSVKHKSAARQNGLHAFAMVPRAPAGSSLDDPSLTGGGSTGYNELNRSY

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