NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1000011

Scaffold Ga0208966_1000011


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1000011 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81496
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (74.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000671Metagenome / Metatranscriptome945Y
F011394Metagenome / Metatranscriptome291Y
F042904Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100001155F000369AGAAGMTEIEPSIHFDKMNKVVSELLKGNSATQIATITGMARKDVLEYIDEWKAVVHNDTNVRDRAREALMGADQHYDILIKEAWKTVEDADTQGQLNVKSGTLKLIADIEGKRIAMLQAVGVLENNEMASQILENEKKQEMLVSILKEVTSNCNHCKIEVAKRLSQITGIVEPIIISQEA
Ga0208966_100001157F000376GGAGMSEYQERAKECKCCTKHVPLPTTLKRYNKITLCPTTYYNVIEYKRIWESYGSRPAGNVRKHFSEYVQQIVESTIDTSE
Ga0208966_100001178F011394GGAMANFINKDKEHFKYGINQWTGEANKPVFYTKEMARKVRELKSPSHDLQMDIIKYPEFLAIRLYENNFSQYDGSMRMRVIDYIEMVKRILESYGVRVELEGKPGGRTR
Ga0208966_100001181F000671GGAMEKVLCYSCNKSKANLNLKRSSLLAINLLMCETCITNKFEPRWTIILCGRQHGHEIVKDYISKKRYVGEDIKASELLI
Ga0208966_100001187F042904N/AMAELTVMDEIVGEVAESLYKKWVSAMPDDEKNQQAFSAMSKNAHETTLFVIQDFMNRFNAAAEELKDK
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