NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209220_1002535

Scaffold Ga0209220_1002535


Overview

Basic Information
Taxon OID3300027587 Open in IMG/M
Scaffold IDGa0209220_1002535 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4982
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001597Metagenome / Metatranscriptome666Y
F030385Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0209220_10025352F001597GGAGMRDESTKQAAQEYLAAKLTEEEQIYEEKHNMALAVARSPLVWTSVKDAIFEKCGEWNAVTQEETLTCKETAIGDLRIWCAARSKQMTVHYDSKKLLITVRNAGRLEHEKDVILHIKGYRTGADRADRDVHLVRNEQAVNIDMLIVGELRVLTGMKRQRNA
Ga0209220_10025354F030385AGGAGMKSFVRVFAAVTLFVLFSTITIQANDKHDKRASLPASVVSARTVYVDNQTTSAELLNTAYTELSKWGRLQTVDTPQKADIVLRLTNGNYVKFVPGGENPPASKPKAGNQDFAGADESVLPGSTRISVIDPKTGNSLWSDIRKTDSAKAAPHMLDGLREAFDQKQK
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