NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209733_1017556

Scaffold Ga0209733_1017556


Overview

Basic Information
Taxon OID3300027591 Open in IMG/M
Scaffold IDGa0209733_1017556 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1922
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005268Metagenome / Metatranscriptome406Y
F058360Metagenome / Metatranscriptome135Y
F072127Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209733_10175561F058360N/AGNAHAAIISLLKSTAYNAVTLVWIGYLKQAQLVSNVGAVTNMNTLGMPLASSAAASDPDAGFMLRVEHAVDRVLSRSDWPKPSTKGSRIVGRKPNPEEGN
Ga0209733_10175562F072127GAGGVIPEHRISGCPQPQVWRKMNEVTDDEREECEGRLLSMAGAGLDPHQRDQSFWAELNQYLAYTYLRFKQAGGKVQDTER
Ga0209733_10175563F005268GAGGVSRSDEETEEQQVWRVLSEAGLVEIPVDEFAEKIRDVKRIVMVRLCELLDFNTDFQERQSAAYSLGALKRLEVKVLANAPKPPEPSEL
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