NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255088_1056293

Scaffold Ga0255088_1056293


Overview

Basic Information
Taxon OID3300027597 Open in IMG/M
Scaffold IDGa0255088_1056293 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepB_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)770
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F036144Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0255088_10562931F000258GGAGGMTANYKLDAMLELRKYLWDQLSSRNINENIVPIIPVQQSAEMNQFLSGKKHIVYDKVGMSYEDNWLICCEQIMLTLYSTSISDINEIRNYLTDEFRRMDESARDINKWSGLSDKFKFHTIWVADISPTAPSEELQGFFAAEVILEIKYSRITDSQGRFL
Ga0255088_10562932F036144N/AGGSAARNQFALAYSRFFSGQLVNTSIKNSGFQSLFNSRLTKAMKLPSNIKKVQYKFSPNIVRSQADSALALAFGGAL
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Institute for Fundamental Biomedical Research
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