NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208324_1000032

Scaffold Ga0208324_1000032


Overview

Basic Information
Taxon OID3300027604 Open in IMG/M
Scaffold IDGa0208324_1000032 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105375
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (75.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000477Metagenome / Metatranscriptome1097Y
F011955Metagenome / Metatranscriptome285Y
F043510Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0208324_100003222F043510GAGGMSESREIRLPEDLCVAAEQRFGSEFRALDDLLIFLLQELLRRDTIDIDRADQRVVEERLRDLGYI
Ga0208324_100003234F011955AGGAMTMTAARAISPPTLPHAELAPILEDDIADLASFIAAQSGRSVEAVEAHLHWFLLENPALQPQHPLGFGLRSSGQFVGCILCSPQAFRLENKNILMMGSSSFYVDTRHRGHGGRIFLQYSRLGSRWPLFGTSANAEAAALWKAAGASPIPHSEAELFGILHWPPVVEEFAHRRNVHPMFHHLAGSPISRLAGMLRRLKIDRRDSEALQLLTSAEQVNDLVCHFHSAKLTALREPSYIRWRYFSGSDATAAVFAFRSRKPDREILVAVNQRTRGYRGQINTLNVLDVYPEIPLEEWLRMIGALIARYGKAVEAVVLRSQDLQRQKMFCELGFQHRAFDAPNGWFLDKASLLPACDWYPVPADGDGLI
Ga0208324_100003267F000477GAGGMPARTKKFTPEIDAKLYKEFVAVAKRNGQSQRYVLEEALKFYLKNVVPSQHLVRREVMEAFEQSVSANRDLLERLAK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.