NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208324_1001308

Scaffold Ga0208324_1001308


Overview

Basic Information
Taxon OID3300027604 Open in IMG/M
Scaffold IDGa0208324_1001308 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9749
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017965Metagenome / Metatranscriptome237Y
F029198Metagenome189Y
F046588Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0208324_100130813F017965GAGMIDLTDMSENIGHRDALYLFACHLEWHTRRNLAAYQDLLAALDDHDCDTRLLAESLLHRSWPRPERTATFVESW
Ga0208324_100130815F029198AGGAGMDSENNSKAVRVAGEVMVLHCWACGSAHCVNLELCVPGELSHMVCSNSNCGMSMFLVNELVVDDKTRKQMTKSEVNAHVTYSRFWK
Ga0208324_10013086F046588GGAGGMTFIPTQTGFMRLEDSEKLLRAIFPNYPSLEPCHSAPRLEPIPQGSKEYVNEERMSLC
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