NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208324_1096584

Scaffold Ga0208324_1096584


Overview

Basic Information
Taxon OID3300027604 Open in IMG/M
Scaffold IDGa0208324_1096584 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)828
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037313Metagenome / Metatranscriptome168Y
F042445Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0208324_10965841F037313AGGAGMSLKLRKLPGLFLWAWVLMLAGCAQQGGGLLQPTPKHTIVPSAAALSMEATNFCNAQAQVDYAGLVLYCEGKTPALPLSINTTYQTEANQFSCQVYGYTNSSNQLIVPQTVTLGNCPTGAAPAPVTAPT
Ga0208324_10965842F042445N/AKSLAAATIAIGLAILAIAAAATTGCSQVHEKMFTLECAIGREPIAGELAPGTAMAIDVSTSPIPLISAPHRIIARCDSFGAVTMYIETPVDTGLSELSTPLSTAASHVTYVP
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