NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000071

Scaffold Ga0208974_1000071


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000071 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43665
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (78.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008072Metagenome / Metatranscriptome339Y
F009735Metagenome / Metatranscriptome313Y
F010601Metagenome301Y
F016782Metagenome / Metatranscriptome244Y
F086809Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100007126F008072AGGMRRKTSHDKRYKKSHWTQNQKLQAVSTYLMLGNMAETAVVTGIPLATLKIWKVTDWFKEYSLQLQSEDVQQMDSNLKRVITKALKATEDRLDLGDAQFDQKTGEIIRIPVKAHVALKISTELMTKQQKLYENPIKEEVERTIDDRLLKLSEEFARFATMKKNTIDVEARVIEQT
Ga0208974_100007136F086809AGGAGMNLDKQLDLVDEMQWEDSGKVEMISLEDAGLEEPALVEETHIHGHMFRNGIHAYLDWFYDGSIENDDY
Ga0208974_100007139F016782GGAGVEITSSPLYAAATESLVSDASATSTFEKMIQVAYTHSTVDTFTKELKDTEKLIKKDFEISSMPGPWRSAKSVIHTAMKLSISLVDDNGSYCGKTYLQNKIKEAKPDKEEVTNQEYIDKVLKLLMEIPGHLDAKTIHAEVKKMLFA
Ga0208974_100007146F009735GAGMTMMTGIVEAISTKDVNTKYGNKPTFSLKINGTWLRCGFKNPNASVGDEVEFDGNTSPYGLETKEVNVLRKGAGTPAPAATSNTATAVPRTTGSGYAAKVFPIPPLHGDRAIVRQNALARATDMYIAARGGKPFELEGSNLDFVISLARKFEAYTAGDLDLAEAEAESAVE
Ga0208974_10000716F010601AGGAVYLELFDNLLWIHVDIKRWSARVKKDCQKDFVLIQSLIGKPIAALVREDDIKLARFARSFGWLEKCQIVLLDGSKAFIYVSKA
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