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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027608 Open in IMG/M |
| Scaffold ID | Ga0208974_1000229 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24281 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (44.12%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009267 | Metagenome / Metatranscriptome | 320 | N |
| F011222 | Metagenome / Metatranscriptome | 293 | N |
| F014249 | Metagenome / Metatranscriptome | 264 | Y |
| F018136 | Metagenome / Metatranscriptome | 236 | N |
| F020694 | Metagenome / Metatranscriptome | 222 | N |
| F023103 | Metagenome | 211 | N |
| F058998 | Metagenome / Metatranscriptome | 134 | N |
| F073149 | Metagenome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208974_100022912 | F073149 | GAG | MPNYYNRTNPSDLRDLAQSLIDTWEETNNPKLQEWIAAPPKPAPNAIWDNGQWVIPPPPSWTAEEWLNKEGYNSTGLVTLLDLSGQLISAGKSSPKLTAVKGWTDGMIAAYAADQAPRSDWTNAPFGFTETTQEAIAILNS |
| Ga0208974_100022922 | F020694 | N/A | MNELPLAVTFGERNFLANRTTYRRDNSLTDGGFMDSASMTITAIYDAFVQTISLGDVLVIGGRRFRVTSAELSQDAVSVDFTLEDINK |
| Ga0208974_100022925 | F018136 | N/A | MITDATYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMTMENLWSQVLCVSHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSSNERHFERSVTITVHAALFAS |
| Ga0208974_100022927 | F011222 | N/A | MAPRLKGAAFLYMDCNKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKEGDELEAKEPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISEHASDKTKQEMTRFLK |
| Ga0208974_100022928 | F009267 | N/A | MKKTQNTDLVKDDEILRIQAMEDGPKKVNGRTLRPITALTISWMQRNEIFSGNMDLVWKAAAFAFLHSEPTSSIRSVVNDRDTFVNAVDSWIEKNMAHHLEVGSMSDAMNSAFELYNASATESKAGSGSPN |
| Ga0208974_100022929 | F023103 | AGAAG | MAKFKFESVKFEQIMKDYAEIREVTIPDAVMLNARLLCVELGRRTQPFGNDETAGTIRVKNDIGKIIKPPVQLLAMANKVENKKIGQRLKSLIMNQRYDVVETIFRNLGFLNKWTGLEFLDSKSGIKTHHQDARIKPTGRTKTKGSKLFISSGSELNTYITEIQKRVGISKGGWADCASQLKKVNKGGLLTGFPSWVKKAVRSGSGSVQDSTSNIKSPKVTLTNNVPWVSQILPASEQLNALSVVSTKMRNQMNMILKKRQKTLTET |
| Ga0208974_10002293 | F058998 | GGAG | MSRQTKEHPKPEHDLQGKIREAEFKNILQKLKDGKTLTARESKIASEFAAQRDGKNKPLTQQEVARAWGMTQPNVHKMVKAGMPLTSIEAAEEWRKEWLKTHGRGDTAPESIQEAKLRKTLLECEKIEFSLSVDRDEYVKRTEIREAGIRIGAIFSAKLAALVNDASGALAGLDEASLRKKLHERTQAILAEIRNELEKV |
| Ga0208974_10002297 | F014249 | AGGA | MAMNKSFFGLPLATLQELQGDFTACLKAIAVAGASYSIAGRSFTRANLAEVAQTIKELQAAIDNASGSRIRKFTPTFPTQRP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |