NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000514

Scaffold Ga0208974_1000514


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000514 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15855
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (61.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013413Metagenome271N
F014620Metagenome261N
F032279Metagenome180Y
F038591Metagenome165Y
F055728Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100051410F014620N/AMFAPSIGLGGTYERPAINRDVVIIAREAQQTSVQAATKVKPKTGKKRARVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVRDGHVIDSGIRRLTRAGNQAIVWRCV
Ga0208974_100051411F013413AGGAMTENEYNETFDMQMEREHQQVMARMQEFKLIGEQISKMPVTSTRTLEIEVRYLMGIISELETQVKNLESETRRLEMLVTRVNN
Ga0208974_100051412F032279GAGGMPFIIKAIIAFALSAIGLGVYQVPQPRPDMSSTTPTSKPYEAVGGFGQYIADVYRFVPPVTTTLAPQPVYKHGDCSWLPKVALQAGWQPEQIPKLLTISARESGCCPRRIGGQRVLPNCTPNGFAETTHMSDSGIMQINGTHWKPDHAQYDGLICKRMGICTQEPLLDALTNLKAARLLYEQAGWSPWSICHRDNTCK
Ga0208974_100051420F038591N/AMTTTARIEVVGVKDTINQLNKLDKELAKEFKASATQIAQPAMNAAKNMYTKVPLSGLSRNWKSQKRTPPQSIKGFDVSRAKAGVQMKFDTRRNAVGVILIIQKDQAAAIFETAGRANANRLSNNLDPVRPGRTRLIGPAVYSARRGIEREMKSVIAEASRTVQKGL
Ga0208974_10005148F055728GGAMRRSYDPHYGSREQLRDSAEHGMKVMRERDALKTENAKLLDEITELKALIAYITEGE
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