NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1001558

Scaffold Ga0208974_1001558


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1001558 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9006
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026266Metagenome198Y
F049625Metagenome146Y
F054866Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10015582F049625AGGMLSDIDLKDWIEQPSIPLYDVPRETPVKTPWGMVWFSHIDGMYSLSYDGNGNPVHMKAWVKVNPYRRKQDE
Ga0208974_10015583F026266AGGAGMSIETITFHFVGQLEDSGAIVDVQCQIDEDGDCRSLDSAMYQGINLLEVISHSQWSDLEWQGSKAYKAEKIEQQTIDHDNQSPLEAIYGLSKPSFNIR
Ga0208974_10015586F054866GGTGGVTVEATRSFSLIQRFNIIMSKYTITHGSIAAVQYVTLPDGDRVTVTDARDGSEIELPRLPLEVQAAVNRQFGTIFALPYDSRQGFIDSSIPFDVEVSE
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