Scaffold Ga0208974_1004047

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208974_1004047

Scaffold Ga0208974_1004047

Overview

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1004047 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5188
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004793	Metagenome / Metatranscriptome	423	Y
F005558	Metagenome	396	Y
F049581	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100404712	F004793	N/A	MNLIEAKKIVGNQPTWALKNMVKALNMLPWLNTAEDELRLKAAKEVLKSRK
Ga0208974_100404713	F005558	AGAAGG	MSQESMSWGELAELTHATQVEKFNFCTCEDNEGKENPYKDCPTS
Ga0208974_100404714	F049581	N/A	RMNIFAISGGRVGITKNNQGETVEVELKVSNGYRVSITLGWDDTWTVSRQFVRKGVVSDKGTLEGVYCENVGEVAYKASCFRNVEFGEKVKA

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