NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1005859

Scaffold Ga0208974_1005859


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1005859 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4196
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011580Metagenome289Y
F012661Metagenome278Y
F026857Metagenome196Y
F034150Metagenome / Metatranscriptome175Y
F088497Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_100585910F012661GAGGMALKNRKPPNAKGQVIFYTDREKQALEHIGNGSVAEGARISIRWAAHFWRVGLRPDFDLNHVGICLFVDDPHADDL
Ga0208974_100585913F026857N/AGNAYLSVRKITEALWVTGDAVRPLPVHTRPFSEDGIHEWMESTRMVQSKGIGTTPIRDLQGNQSGIDQNNEGTK
Ga0208974_10058596F088497AGGMNKPLEWQALWDAMDTNPDQWIPTTEKMYWEMLEVLPPRKQSRGAFLVGEASNHNAEGYPVYSCFKREGDSFFAKSMTFNQFNQEVSA
Ga0208974_10058597F034150GAGGMSTGTNAPIKPSFDGQIVKFISPHANVWLYDICRLNAKYGHLEWWALSEPTTDQKNQAKEVTV
Ga0208974_10058598F011580GAGGMTQTQALTKALILAITAPDDDRAHHASRLAESIAQGLNADQVEQCKANALFILGENP
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