Scaffold Ga0208974_1006236

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208974_1006236

Scaffold Ga0208974_1006236

Overview

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1006236 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4040
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F009514	Metagenome	316	N
F017297	Metagenome	241	Y
F048999	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10062361	F017297	AGG	MKITEQKNGNYTTFERTFPGGYYIVKLYKRGELADKIMTDTYQAARDYLRSFNLIAKNG
Ga0208974_100623610	F002707	AGG	MTQIEALTQCLVLALTAPNDQKAQKASDLAEQIAQGLTVDQVEDCKAQALELVEAL
Ga0208974_10062364	F009514	AGG	MTKQQILALQSIGKGIIESANLSSTGAPGGVIYSALMGQGATFNQFEQIMSTLVRHGFLSHDVDASTYHATDAGLQWAKKV
Ga0208974_10062365	F048999	AGG	MLTITLHQKTDNDGWQSIKSLPIDSSQWGEIDRSWIDTLMQTGSMVITIGHTMYSIDKN

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