NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1008346

Scaffold Ga0208974_1008346


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1008346 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3438
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011223Metagenome293Y
F014133Metagenome265Y
F050192Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10083464F011223GGAGMSKIKIQLVEDEEETPTVFERFWDNLMVFVKCVGVFAAICFAIGYFSSTKAQTTQCEPTKTVLARSIFK
Ga0208974_10083465F014133AGGAGMNHVKQAWQWLMTHWVMPTPLELINEELVHAQRNKLRHESSQEYHAAIVAYNAARIKRLEARLAKQETTE
Ga0208974_10083469F050192AGGMLKREWKPWYPKHKGPVEPDRTILEMAVARELLATWAVIKDKALVDRHLAAVEKRYGAGAEQRVRQHMRKIAKDECHV
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