NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1017632

Scaffold Ga0208974_1017632


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1017632 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2245
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002268Metagenome / Metatranscriptome576Y
F002869Metagenome / Metatranscriptome524Y
F007163Metagenome / Metatranscriptome356Y
F075746Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_10176323F002268GAGGMSGTPASSSPGITGFIEIFEGRLNKMKLHLKEELGKAKHDRDRKSIRRITADARKLNKTLKEMRNASAKKCPHCGEKL
Ga0208974_10176325F002869GGAMTGEITVEMLDQTIQWCKQNAFWGKGSAIPRMLDFYFEKTRSIVDEDWPESFTLEELAQALGIEQVRYRIYYSQDNLTLRLFVFRPRCTWDEQKIMLDLGFVIAQDNDSDTIPNQPVEAVEL
Ga0208974_10176327F075746AGGAMTIFIPVLFICLNGNCEFMQGKTHYKNEAQCVASLDMQKQHMRNLVKEAEKQGTKGDITILEGTCVDAEIKTTQGRVT
Ga0208974_10176328F007163AGGAMTLEDLQYIFEYQIEEGTEKLYFMLTDGDCHPVIQRHPSDDLHGLLPMLESFQYTGHNVMPRFKK
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