Scaffold Ga0208974_1021722

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208974_1021722

Scaffold Ga0208974_1021722

Overview

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1021722 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1985
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002099	Metagenome / Metatranscriptome	593	Y
F004432	Metagenome / Metatranscriptome	438	Y
F067527	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10217222	F004432	AGGA	MVTKKPPAKVAPVKRRSPKTEQTINVSVAAPTKSEPKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLSFAGYFAWDSRQVLLHAITTQDKMPQLAKQENLLAPARSLLKDVDGIVLLIHKANLATNSRTTVLALNADGSREKSMEGTVTSLFNASADRNGAMVAMLNGEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDLGKFAGYVAIGFKEKPEDIAALKTRINLASTDMSEE
Ga0208974_10217223	F067527	GGA	MITLDKYYPIVQPRRDIESVAFDKAVEKVQEEYKQAVQANKIEKATIELELELYNKKARVIQLELSMFKTRRLDLYA
Ga0208974_10217224	F002099	N/A	VRWLIALVLILSLHSTGKDLCSVREFYGIAYTIHNPSERHQQMTMWLTNHQNLCKSSDFVVIWNNLSEWAGAADSALLRHKVIQGYKNALEREKK

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